Who is Who in Phylogenetic Networks

Publication no #2068   Type :   Html | Bib | Both

Created: 2010-12-25 13:25:13     Modified: 2011-04-27 20:25:20

2068 Klaus Schliep. Phangorn: Phylogenetic analysis in R. In Bioinformatics, Vol. 27(4):592-593, 2011. Keywords: abstract network, from distances, phylogenetic network, Program Phangorn, software, split, split network. Note: http://dx.doi.org/10.1093/bioinformatics/btq706.         Toggle abstract "Summary: phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with distance methods in R. phangorn, now offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing Hadamard conjugation. Extending the general ML framework, this package provides the possibility of estimating mixture and partition models. Furthermore, phangorn offers several functions for comparing trees, phylogenetic models or splits, simulating character data and performing congruence analyses. © The Author(s) 2010. Published by Oxford University Press." @Article{Schliep2011,       AUTHOR = {Schliep, Klaus},       TITLE = {Phangorn: Phylogenetic analysis in R},       YEAR = {2011},       JOURNAL = {Bioinformatics},       VOLUME = {27},       NUMBER = {4},       PAGES = {592-593},       URL = {http://dx.doi.org/10.1093/bioinformatics/btq706},       NOTE = {http://dx.doi.org/10.1093/bioinformatics/btq706},       KEYWORDS = {abstract network, from distances, phylogenetic network, Program Phangorn, software, split, split network} }