Who is Who in Phylogenetic Networks

Publication no #2192   Type :   Html | Bib | Both

Created: 2012-03-21 01:06:12     Modified: 2012-08-06 11:22:48

2192 Reza Hassanzadeh, Changiz Eslahchi and Wing-Kin Sung. Constructing phylogenetic supernetworks based on simulated annealing. In MPE, Vol. 63(3):738-744, 2012. Keywords: abstract network, from unrooted trees, heuristic, phylogenetic network, phylogeny, Program SNSA, reconstruction, simulated annealing, software, split network. Note: http://dx.doi.org/10.1016/j.ympev.2012.02.009.         Toggle abstract Different partial phylogenetic trees can be derived from different sources of evidence and different methods. One important problem is to summarize these partial phylogenetic trees using a supernetwork. We propose a novel simulated annealing based method called SNSA which uses an optimization function to produce a simple network that still retains a great deal of phylogenetic information. We report the performance of this new method on real and simulated datasets. © 2012 Elsevier Inc. @Article{HES2012,       AUTHOR = {Hassanzadeh, Reza and Eslahchi, Changiz and Sung, Wing-Kin},       TITLE = {Constructing phylogenetic supernetworks based on simulated annealing},       YEAR = {2012},       JOURNAL = {MPE},       VOLUME = {63},       NUMBER = {3},       PAGES = {738-744},       URL = {http://dx.doi.org/10.1016/j.ympev.2012.02.009},       NOTE = {http://dx.doi.org/10.1016/j.ympev.2012.02.009},       KEYWORDS = {abstract network, from unrooted trees, heuristic, phylogenetic network, phylogeny, Program SNSA, reconstruction, simulated annealing, software, split network} }