Who is Who in Phylogenetic Networks

Publication no #639   Type :   Html | Bib | Both

Created: 2008-06-05 12:05:01     Modified: 2010-08-06 18:51:13

639 Daniel H. Huson and Regula Rupp. Summarizing Multiple Gene Trees Using Cluster Networks. In WABI08, Vol. 5251:296-305 of LNCS, springer, 2008. Keywords: abstract network, from clusters, from rooted trees, phylogenetic network, phylogeny, polynomial, Program Dendroscope. Note: http://dx.doi.org/10.1007/978-3-540-87361-7_25, slides from the MIEP Conference available at http://www.lirmm.fr/MIEP08/slides/11_13_rupp.pdf.         Toggle abstract "The result of a multiple gene tree analysis is usually a number of different tree topologies that are each supported by a significant proportion of the genes. We introduce the concept of a cluster network that can be used to combine such trees into a single rooted network, which can be drawn either as a cladogram or phylogram. In contrast to split networks, which can grow exponentially in the size of the input, cluster networks grow only quadratically. A cluster network is easily computed using a modification of the tree-popping algorithm, which we call network-popping. The approach has been implemented as part of the Dendroscope tree-drawing program and its application is illustrated using data and results from three recent studies on large numbers of gene trees. © 2008 Springer-Verlag Berlin Heidelberg." @InProceedings{RuppHuson2008,       AUTHOR = {Huson, Daniel H. and Rupp, Regula},       TITLE = {Summarizing Multiple Gene Trees Using Cluster Networks},       YEAR = {2008},       BOOKTITLE = {WABI08},       VOLUME = {5251},       PAGES = {296-305},       SERIES = {LNCS},       PUBLISHER = {springer},       URL = {http://dx.doi.org/10.1007/978-3-540-87361-7_25},       NOTE = {http://dx.doi.org/10.1007/978-3-540-87361-7_25, slides from the MIEP Conference available at http://www.lirmm.fr/MIEP08/slides/11_13_rupp.pdf},       ANNOTE = {BIBUPDATE : 20080605},       KEYWORDS = {abstract network, from clusters, from rooted trees, phylogenetic network, phylogeny, polynomial, Program Dendroscope} }