Who is Who in Phylogenetic Networks

Publication no #689   Type :   Html | Bib | Both

Created: 2009-03-13 11:39:05

689 Martin Lott, Andreas Spillner, Katharina Huber and Vincent Moulton. PADRE: A Package for Analyzing and Displaying Reticulate Evolution. In BIO, Vol. 25(9):1199-1200, 2009. Keywords: duplication, explicit network, from multilabeled tree, phylogenetic network, phylogeny, Program PADRE, reconstruction, software. Note: http://dx.doi.org/10.1093/bioinformatics/btp133.         Toggle abstract "Recent advances in gene sequencing for polyploid species, coupled with standard phylogenetic tree reconstruction, leads to gene trees in which the same species can label several leaves. Such multi-labeled trees are then used to reconstruct the evolutionary history of the polyploid species in question. However, this reconstruction process requires new techniques that are not available in current phylogenetic software packages. Here, we describe the software package PADRE (Package for Analyzing and Displaying Reticulate Evolution) that implements such techniques, allowing the reconstruction of complex evolutionary histories for polyploids in the form of phylogenetic networks. © The Author 2009. Published by Oxford University Press. All rights reserved." @Article{LSHM2009,       AUTHOR = {Lott, Martin and Spillner, Andreas and Huber, Katharina and Moulton, Vincent},       TITLE = {PADRE: A Package for Analyzing and Displaying Reticulate Evolution},       YEAR = {2009},       JOURNAL = {BIO},       VOLUME = {25},       NUMBER = {9},       PAGES = {1199-1200},       URL = {http://dx.doi.org/10.1093/bioinformatics/btp133},       NOTE = {http://dx.doi.org/10.1093/bioinformatics/btp133},       KEYWORDS = {duplication, explicit network, from multilabeled tree, phylogenetic network, phylogeny, Program PADRE, reconstruction, software} }