Who is Who in Phylogenetic Networks

Publication no #715   Type :   Html | Bib | Both

Created: 2009-11-06 03:25:04     Modified: 2010-12-25 13:56:26

715 Leo van Iersel, Charles Semple and Mike Steel. Quantifying the Extent of Lateral Gene Transfer Required to Avert a 'Genome of Eden'. In BMB, Vol. 72:1783–1798, 2010. Note: http://www.win.tue.nl/~liersel/LGT.pdf.         Toggle abstract "The complex pattern of presence and absence of many genes across different species provides tantalising clues as to how genes evolved through the processes of gene genesis, gene loss, and lateral gene transfer (LGT). The extent of LGT, particularly in prokaryotes, and its implications for creating a 'network of life' rather than a 'tree of life' is controversial. In this paper, we formally model the problem of quantifying LGT, and provide exact mathematical bounds, and new computational results. In particular, we investigate the computational complexity of quantifying the extent of LGT under the simple models of gene genesis, loss, and transfer on which a recent heuristic analysis of biological data relied. Our approach takes advantage of a relationship between LGT optimization and graph-theoretical concepts such as tree width and network flow. © 2010 Society for Mathematical Biology." @Article{ISS2010,       AUTHOR = {van Iersel, Leo and Semple, Charles and Steel, Mike},       TITLE = {Quantifying the Extent of Lateral Gene Transfer Required to Avert a 'Genome of Eden'},       YEAR = {2010},       JOURNAL = {BMB},       VOLUME = {72},       PAGES = {1783{\^a}��1798},       URL = {http://dx.doi.org/10.1007/s11538-010-9506-7},       NOTE = {http://www.win.tue.nl/~liersel/LGT.pdf} }