Who is Who in Phylogenetic Networks

Publications related to 'Program Beagle' : Beagle is a small collection of related programs for analysing the minimum number of recombinations required for a SNP data set under the infinite sites model. Available at http://www.stats.ox.ac.uk/~lyngsoe/beagle/.   Order by:   Type | Year

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Associated keywords

abstract-network ARG branch-and-bound consensus explicit-network from-rooted-trees from-sequences from-splits from-unrooted-trees galled-tree hybridization minimum-number phylogenetic-network phylogeny Program-Beagle Program-GalledTree Program-Spectronet Program-SplitsTree Program-SPNet recombination reconstruction software split-network survey

Article (Journal)

1 Dan Gusfield, Vikas Bansal, Vineet Bafna and Yun S. Song. A Decomposition Theory for Phylogenetic Networks and Incompatible Characters. In JCB, Vol. 14(10):1247-1272, 2007. Keywords: explicit network, from sequences, galled tree, phylogenetic network, phylogeny, Program Beagle, Program GalledTree, recombination, reconstruction, software. Note: http://www.eecs.berkeley.edu/~yss/Pub/decomposition.pdf.

InProceedings

2 Rune Lyngsø, Yun S. Song and Jotun Hein. Minimum Recombination Histories by Branch and Bound. In WABI05, Vol. 3692:239-250 of LNCS, springer, 2005. Keywords: ARG, branch and bound, from sequences, minimum number, Program Beagle, recombination, reconstruction, software. Note: http://www.cs.ucdavis.edu/~yssong/Pub/WABI05-239.pdf.

InBook

3 Daniel H. Huson. Split networks and Reticulate Networks. In Olivier Gascuel and Mike Steel editors, Reconstructing Evolution, New Mathematical and Computational Advances, Pages 247-276, Oxford University Press, 2007. Keywords: abstract network, consensus, from rooted trees, from sequences, from splits, from unrooted trees, galled tree, hybridization, phylogenetic network, phylogeny, Program Beagle, Program Spectronet, Program SplitsTree, Program SPNet, recombination, reconstruction, split network, survey. Note: similar to http://www-ab.informatik.uni-tuebingen.de/research/phylonets/GCB2006.pdf.