Who is Who in Phylogenetic Networks

Publications related to 'Program Phangorn' : Phangorn is an R package which provides methods to reconstruct phylogenetic trees, and a method to reconstruct a split network. Available at http://cran.r-project.org/web/packages/phangorn/index.html.   Order by:   Type | Year

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Associated keywords

abstract-network from-distances phylogenetic-network Program-Phangorn reconstruction software split split-network

Article (Journal)

1 Klaus Schliep. Phangorn: Phylogenetic analysis in R. In Bioinformatics, Vol. 27(4):592-593, 2011. Keywords: abstract network, from distances, phylogenetic network, Program Phangorn, software, split, split network. Note: http://dx.doi.org/10.1093/bioinformatics/btq706.         Toggle abstract "Summary: phangorn is a package for phylogenetic reconstruction and analysis in the R language. Previously it was only possible to estimate phylogenetic trees with distance methods in R. phangorn, now offers the possibility of reconstructing phylogenies with distance based methods, maximum parsimony or maximum likelihood (ML) and performing Hadamard conjugation. Extending the general ML framework, this package provides the possibility of estimating mixture and partition models. Furthermore, phangorn offers several functions for comparing trees, phylogenetic models or splits, simulating character data and performing congruence analyses. © The Author(s) 2010. Published by Oxford University Press."

PhdThesis

2 Klaus Schliep. Some applications of statistical phylogenetics. PhD thesis, Massey University, New Zealand, 2009. Keywords: abstract network, phylogenetic network, Program Phangorn, reconstruction, split network. Note: http://muir.massey.ac.nz/handle/10179/931.