Who is Who in Phylogenetic Networks

Publications related to 'Program Pyramids' : Pyramids computes a pyramidal classification from a dissimilarity matrix. It was available at http://genome.genetique.uvsq.fr/Pyramids.   Order by:   Type | Year

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Associated keywords

abstract-network evaluation from-distances hybridization lateral-gene-transfer median-network NeighborNet netting phylogenetic-network phylogeny Program-Arlequin Program-Network Program-Pyramids Program-Reticlad Program-SplitsTree Program-T-REX Program-TCS Program-WeakHierarchies pyramid reconstruction reticulogram software split split-decomposition split-network survey visualization weak-hierarchy

Article (Journal)

1 Jean-Christophe Aude, Yolande Diaz-Lazcoz, Jean-Jacques Codani and Jean-Loup Risler. Applications of the Pyramidal Clustering Method to Biological Objects. In CC, Vol. 23(3-4):303-315, 1999. Keywords: from distances, phylogenetic network, phylogeny, Program Pyramids, pyramid, reconstruction, software, visualization. Note: http://dx.doi.org/10.1016/S0097-8485(99)00006-6.         2 François-Joseph Lapointe. How to account for reticulation events in phylogenetic analysis: A review of distance-based methods. In Journal of Classification, Vol. 17:175-184, 2000. Keywords: abstract network, evaluation, from distances, phylogenetic network, Program Pyramids, Program SplitsTree, Program T REX, pyramid, reconstruction, reticulogram, split network, survey, weak hierarchy. Note: http://dx.doi.org/10.1007/s003570000016.

InBook

3 Vladimir Makarenkov, Dmytro Kevorkov and Pierre Legendre. Phylogenetic Network Construction Approaches. In Applied Mycology and Biotechnology, Vol. 6:61-97, 2006. Keywords: from distances, hybridization, lateral gene transfer, median network, NeighborNet, netting, Program Arlequin, Program Network, Program Pyramids, Program Reticlad, Program SplitsTree, Program T REX, Program TCS, Program WeakHierarchies, pyramid, reticulogram, split, split decomposition, split network, survey, weak hierarchy. Note: http://www.labunix.uqam.ca/~makarenv/makarenv/MKL_article.pdf.